10.1186/2193-8865-3-75

DFT/NBO study of Nanotube and Calixarene with anti-cancer drug

  1. Department of Chemistry, Science and Research Branch, Islamic Azad University, Tehran, IR Department of Chemistry, Shahid Beheshti University, Evin, Tehran, IR
  2. Young Researchers and Elites Club, Rasht Branch, Islamic Azad University, Rasht, IR
  3. Department of Chemistry, Islamshahr Branch, Islamic Azad University, Islamshahr, IR
Cover Image

Published in Issue 03-09-2013

How to Cite

Zare, K., Shadmani, N., & Pournamdari, E. (2013). DFT/NBO study of Nanotube and Calixarene with anti-cancer drug. Journal of Nanostructure in Chemistry, 3(1 (December 2013). https://doi.org/10.1186/2193-8865-3-75

HTML views: 83

PDF views: 84

Abstract

Abstract Nowadays use of calixarenes and nanotubes are widely spread in the pharmaceutical industry. In this work, interaction of between calix[4]arene and nanotube (6, 6) with Fluorouracil drug are investigated. The DFT calculations have been performed using the Gauss view and Gaussian98 in B3LYP method and 6-31G (d) standard basis set at 298.15K. There are calculated length bond (Å), bond angel (deg), dihedral angel (deg), energy hyperconjucation, and total energy (KJ mol -1 ), moment dipole (Debye), occupancy between nanotube (6, 6) and calix[4]arene with anticancer drug in B3LYP/6-31G ( d ) method. These cases and medicines show that complex1 is more stable than complex1. The parameter of E 2 , gap energy and ∆E° in composite of nanotube- Fluorouracil are higher than calix[4]arene-Fluororacil; therefore, complex1is more stable.

Keywords

  • Drug delivery,
  • Nanotube,
  • DFT,
  • Fluorouracil,
  • Calix[n]arene,
  • NBO,
  • Capacity heat,
  • Formation energy

References

  1. Wong Shi Kam et al. (2004) Nanotube molecular transporters: Internalization of carbon nanotube-protein conjugates into mammalian cells (pp. 6850-6851) https://doi.org/10.1021/ja0486059
  2. Colomer et al. (2001) 2001 (pp. 1-7) https://doi.org/10.1103/PhysRevB.64.125425
  3. Moradi and Zare (2011) Adsorption of Pb(II), Cd(II) and Cu(II) Ions in Aqueous Solution on SWCNTs and SWCNT–COOH Surfaces: Kinetics Studies (pp. 628-652) https://doi.org/10.1080/1536383X.2010.504955
  4. Pouton and Seymour (2001) Key issues in non-viral gene delivery (pp. 187-203) https://doi.org/10.1016/S0169-409X(00)00133-2
  5. Singh et al. (2006) Tissue biodistribution and blood clearance rates of intravenously administered carbon nanotube radiotracers (pp. 3357-3362) https://doi.org/10.1073/pnas.0509009103
  6. Iijima (1991) Helical microtubules of graphitic carbon (pp. 56-58) https://doi.org/10.1038/354056a0
  7. Yan et al. (2004) Ultrahard diamond single crystals from chemical vapor deposition 201(4) (pp. 25-27) https://doi.org/10.1002/pssa.200409033
  8. Kalele et al. (2006) Nanoshell particles: synthesis, properties and applications
  9. Wong Shi Kam et al. (2004) Nanotube molecular transporters: Internalization of carbon nanotube-protein conjugates into mammalian cells (pp. 6850-6851) https://doi.org/10.1021/ja0486059
  10. Pastorin (2009) Crucial Functionalizations of Carbon Nanotubes for Improved Drug Delivery: A Valuable Option? (pp. 746-769) https://doi.org/10.1007/s11095-008-9811-0
  11. Taft et al. (2004) Site-specific 258 assembly of DNA and appended cargo on arrayed carbon nanotubes (pp. 12750-12751) https://doi.org/10.1021/ja045543d
  12. Pantarotto et al. (2004) Functionalized carbon nanotubes for plasmid DNA 262 gene delivery (pp. 5242-5236) https://doi.org/10.1002/anie.200460437
  13. Asfari et al. (2001) ED; Kluwer
  14. Gungor et al. (2005) Synthesis of Alkyl Nitrile and Alkyl Benzonitrile Derivatives of Calix[4]Arene and Their Polymer Supported Analogues: A Comparative Study in Two-Phase Extraction Systems (pp. 1-9) https://doi.org/10.1016/j.reactfunctpolym.2005.02.004
  15. Gutsche and Bauer (1985) The conformational properties of calix[4]arenes, calix[6]arenes, calix[8]arenes, and oxacalixarenes (pp. 6052-6059) https://doi.org/10.1021/ja00307a038
  16. Faraji et al. (2012) Complexation of p-Sulphonato-calix[6]arene by Glycine, Glycyl-glycine, and Glycyl-glycyl-glycine in Aqueous Solution
  17. Gharib et al. (2003) Complexation of tri-o-propoyl-p-t-butyl calix[4]arene with alkali metal cations in carbon tetrachloride solvent (pp. 255-258)
  18. Gharib et al. (2004) Spectrophotometric studies of alkali metal ion complexes of p-tetrabutyl- calix[4]arenes (pp. 1511-1514)
  19. Gharib et al. (2010) Spectrophotometric studies of alkali and alkali earth metal ions complexes of mono amino derivative of calix[4]arene (pp. 434-437) https://doi.org/10.1134/S003602361003023X
  20. Brunink et al. (1992) Synthesis and cation complexation selectivity of bis (syn-proximally) functionalized calix[4]arenes (pp. 511-516) https://doi.org/10.1002/recl.19921111203
  21. Shirakawa and Shimizu (2008) Dehydrative amination of alcohols in water using a water-soluble calix[4]resorcinarene sulfonic acid (pp. 1539-1542)
  22. Liu et al. (2008) Calix[n]arene sulfonic acids bearing pendant aliphatic chains as recyclable surfactant-type Brønsted acid catalysts for allylic alkylation with allyl alcohols in water (pp. 635-640) https://doi.org/10.1039/b719278a
  23. Zhang et al. (2002) Interaction of Sulfonated Calix[n]arenes with Rhodamine B and Its Application to Determine Acetylcholine in a Real Neutral Aqueous Medium J (pp. 322-326) https://doi.org/10.1002/cjoc.20020200406
  24. Dolg (2009) Recent progress in understanding chemical shifts (pp. 7348-7355)
  25. de Dios and Oldfield (1996) Antimalarial drugs and heme in detergent micelles: an NMR study (pp. 101-125) https://doi.org/10.1016/0926-2040(95)01207-9
  26. Whitehead et al. (2004) A phase II study of high-dose 24 hour continuous infusion 5-FU and leucovorin and low-dose PALA for patients with advanced pancreatic adenocarcinoma: A Southwest Oncology Group Study (pp. 335-341) https://doi.org/10.1023/B:DRUG.0000026261.76197.54
  27. Cornell et al. (1960) Clinical experience with 5-fluorouracil (NSC-19 893) in the treatment of malignant disease (pp. 23-30)
  28. Monajjemi et al. (2005) Study of the hydrogen bond in different orientations of adenine-thymine base pairs: an ab initio study (pp. 366-76)
  29. Guo and Liu (2012) Calixarene-based supramolecular polymerization in solution (pp. 5907-5921) https://doi.org/10.1039/c2cs35075k
  30. Tirado-Rives and Jorgensen (2008) Performance of B3LYP Density Functional Methods for a Large Set of Organic Molecules (pp. 297-306) https://doi.org/10.1021/ct700248k
  31. Zeevaart et al. (2008) Optimization of azoles as anti-human immunodeficiency virus agents guided by free-energy calculations (pp. 9492-9499) https://doi.org/10.1021/ja8019214
  32. Casabianca et al. (2009) Antimalarial drugs and heme in detergent micelles: An NMR study (pp. 745-748) https://doi.org/10.1016/j.jinorgbio.2009.01.013
  33. Abul Haider Shipar (2011) DFT Studies on Fructose and Glycine Maillard Reaction: Formation of the Heyns Rearrangement Products in the Initial Stage (pp. 433-448) https://doi.org/10.1007/BF03249077
  34. Delchev (2010) Computational (DFT and TD DFT) study of the electron structure of the tautomers/conformers of uridine and deoxyuridine and the processes of intramolecular proton transfers (pp. 749-757) https://doi.org/10.1007/s00894-009-0593-z
  35. Ramachandran et al. (2008) Research on computational chemistry and molecular modeling (pp. 297-310) Springer
  36. Miehlich et al. (1989) Results obtained with the correlation energy density functionals of Becke and Lee–Yang and Parr (pp. 200-206) https://doi.org/10.1016/0009-2614(89)87234-3
  37. Dalili et al. (2011) Calixarenes or Nanotubes: Which are better in drug delivery? (pp. 213-217)
  38. . Nanotube Modeler. version 1.2.4 (2004–2005)
  39. http://www.jcrystal.com/products/wincnt/Nanotube
  40. Frisch et al. (2000) Gaussian Inc.
  41. Frisch et al. (2003) Gaussian Inc
  42. Glendening et al. (2003) Gaussian Inc
  43. Fernandez et al. (2007) Molecular precursors of mesostructured silica materials in the atrane route: A DFT/GIAO/NBO theoretical study (pp. 89-102) https://doi.org/10.1016/j.theochem.2007.07.022