10.1007/s40089-015-0177-0

Nanoparticles based DNA conjugates for detection of pathogenic microorganisms

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  • Pragati Jamdagni*1,
  • Poonam Khatri1,
  • J. S. Rana1,
  1. Department of Biotechnology, Deenbandhu Chhotu Ram University of Science and Technology, Sonipat, Haryana, 131039, IN
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Published in Issue 2016-01-27

How to Cite

Jamdagni, P., Khatri, P., & Rana, J. S. (2016). Nanoparticles based DNA conjugates for detection of pathogenic microorganisms. International Nano Letters, 6(3 (September 2016). https://doi.org/10.1007/s40089-015-0177-0
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Abstract

Abstract Infectious diseases have been on rise in the recent past. Early diagnosis plays a role as important as proper treatment and prophylaxis. The current practices of detection are time consuming which may result in unnecessary delays in treatment. Advances in nanodiagnostic approaches have been in focus lately. The rising interest and better understanding of nanoparticles have led to opening up of new frontiers in the concerned area. Optical properties of nanoparticles are being exploited to design detection systems that can provide fast, one-step and reliable results. Based on conserved DNA sequences unique to the target organism, the results offer accuracy comparable to conventional tests. Further, visual or spectrophotometric analysis omits the need of costly apparatus for result interpretation. The present review aims at putting together the information on nanoparticles based DNA conjugate systems for detection of pathogenic microorganisms.

Keywords

  • Nanoparticle–oligonucleotide,
  • Conjugates,
  • Detection,
  • Microorgansims
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References

  1. Jo et al. (2009) Antifungal activity of silver ions and nanoparticles on phytopathogenic fungi 93(10) (pp. 1037-1043) https://doi.org/10.1094/PDIS-93-10-1037
  2. Knoll and Keilmann (1999) Near-field probing of vibrational absorption for chemical microscopy (pp. 134-137) https://doi.org/10.1038/20154
  3. Sengupta et al. (2005) Temporal targeting of tumour cells and neovasculature with a nanoscale delivery system (pp. 568-572) https://doi.org/10.1038/nature03794
  4. Fauci (2001) Infectious diseases: considerations for the 21st century 32(5) (pp. 675-685) https://doi.org/10.1086/319235
  5. Brachman (2003) Infectious diseases—past, present, and future 32(5) (pp. 684-686) https://doi.org/10.1093/ije/dyg282
  6. Syed and Bokhari (2011) Gold nanoparticle based microbial detection and identification 7(2) (pp. 229-237) https://doi.org/10.1166/jbn.2011.1281
  7. Syed (2014) Advances in nanodiagnostic techniques for microbial agents (pp. 391-400) https://doi.org/10.1016/j.bios.2013.08.010
  8. Muldrew (2009) Molecular diagnostics of infectious diseases 21(1) (pp. 102-111) https://doi.org/10.1097/MOP.0b013e328320d87e
  9. Houpikian and Raoult (2002) Traditional and molecular techniques for the study of emerging bacterial diseases: one laboratory’s perspective 8(2) (pp. 122-131) https://doi.org/10.3201/eid0802.010141
  10. Chen et al. (2004) Nanotechnology and biosensors 22(7) (pp. 505-518) https://doi.org/10.1016/j.biotechadv.2004.03.004
  11. Kaittanis et al. (2010) Emerging nanotechnology-based strategies for the identification of microbial pathogenesis 62(4–5) (pp. 408-423) https://doi.org/10.1016/j.addr.2009.11.013
  12. Thompson et al. (2008) Ultrasensitive DNA detection using oligonucleotide-silver nanoparticle conjugates 80(8) (pp. 2805-2810) https://doi.org/10.1021/ac702403w
  13. Storhoff et al. (1998) One-pot colorimetric differentiation of polynucleotides with single base imperfections using gold nanoparticle probes (pp. 1959-1964) https://doi.org/10.1021/ja972332i
  14. Storhoff et al. (2004) Homogeneous detection of unamplified genomic DNA sequences based on colorimetric scatter of gold nanoparticle probes 22(7) (pp. 883-887) https://doi.org/10.1038/nbt977
  15. Chen et al. (2004) Gold and silver nanoparticles functionalized with known numbers of oligonucleotides per particle for DNA detection (pp. 2804-2805) https://doi.org/10.1039/b411181h
  16. Cai et al. (2010) One-pot polymerase chain reaction with gold nanoparticles for rapid and ultrasensitive DNA detection (pp. 557-563) https://doi.org/10.1007/s12274-010-0016-6
  17. Pradeep (2007) (pp. 128-155) Tata McGraw-Hill Publishing Company Ltd.
  18. Sandström et al. (2003) Nonspecific and thiol-specific binding of DNA to gold nanoparticles (pp. 7537-7543) https://doi.org/10.1021/la034348u
  19. Baptista et al. (2005) Colorimetric detection of eukaryotic gene expression with DNA-derivatized goldnanoparticles (pp. 111-117) https://doi.org/10.1016/j.jbiotec.2005.02.019
  20. Zeng et al. (2014) Nanomaterials enhanced surface plasmon resonance for biological and chemical sensing applications (pp. 3426-3452) https://doi.org/10.1039/c3cs60479a
  21. Mirkin et al. (1996) A DNA-based method for rationally assembling nanoparticles into macroscopic materials (pp. 607-609) https://doi.org/10.1038/382607a0
  22. Reynolds et al. (2000) Homogeneous, nanoparticle-based quantitative colorimetric detection of oligonucleotides (pp. 3795-3796) https://doi.org/10.1021/ja000133k
  23. Demers et al. (2000) A fluorescence-based method for determining the surface coverage and hybridization efficiency of thiol-capped oligonucleotides bound to gold thin films and nanoparticles (pp. 5535-5541) https://doi.org/10.1021/ac0006627
  24. Storhoff et al. (2002) Sequence-dependent stability of DNA-modified gold nanoparticles (pp. 6666-6670) https://doi.org/10.1021/la0202428
  25. Sato et al. (2003) Rapid aggregation of gold nanoparticles induced by non-cross-linking DNA hybridization 125(27) (pp. 8102-8103) https://doi.org/10.1021/ja034876s
  26. Hill and Mirkin (2006) The bio-barcode assay for the detection of protein and nucleic acid targets using DTT-induced ligand exchange 1(1) (pp. 324-336) https://doi.org/10.1038/nprot.2006.51
  27. Liu et al. (2006) Silver nanoparticle-based ultrasensitive chemiluminescent detection of DNA hybridization and single-nucleotide polymorphisms 78(11) (pp. 3738-3744) https://doi.org/10.1021/ac0522409
  28. Lee et al. (2007) Silver nanoparticle–oligonucleotide conjugates based on DNA with triple cyclic disulfide moieties 7(7) (pp. 2112-2115) https://doi.org/10.1021/nl071108g
  29. Thompson et al. (2010) Precise control of the assembly of dye-coded oligonucleotide silver nanoparticle conjugates with single base mismatch discrimination using surface enhanced resonance raman scattering 114(16) (pp. 7384-7389) https://doi.org/10.1021/jp909639b
  30. Kim et al. (2011) The affinity ratio—its pivotal role in gold nanoparticle-based competitive colorimetric aptasensor (pp. 4058-4063) https://doi.org/10.1016/j.bios.2011.03.030
  31. Vidal et al. (2005) Stability and hybridization-driven aggregation of silver nanoparticle–oligonucleotide conjugates (pp. 812-816) https://doi.org/10.1039/b417683a
  32. Cordray et al. (2012) Gold nanoparticle aggregation for quantification of oligonucleotides: optimization and increased dynamic range 431(2) (pp. 99-105) https://doi.org/10.1016/j.ab.2012.09.013
  33. Zhang et al. (2009) Fluorescent bio-barcode DNA assay for the detection of Salmonella entericaSerovar enteritidis (pp. 1377-1381) https://doi.org/10.1016/j.bios.2008.07.081
  34. Dougan et al. (2007) Enhanced oligonucleotide-nanoparticle conjugate stability using thioctic acid modified oligonucleotides 35(11) (pp. 3668-3675) https://doi.org/10.1093/nar/gkm237
  35. Li et al. (2002) Multiple thiol-anchor capped DNA-gold nanoparticle conjugates 30(7) (pp. 1558-1562) https://doi.org/10.1093/nar/30.7.1558
  36. Cotton et al. (1999) (pp. 27-29) Wiley
  37. Nicewarner-Pena et al. (2002) Hybridization and enzymatic extension of au nanoparticle-bound oligonucleotides 124(25) (pp. 7314-7323) https://doi.org/10.1021/ja0177915
  38. Baptista et al. (2006) Gold nanoparticle-probe-based assay for rapid and direct detection of Mycobacterium tuberculosis DNA in clinical samples 52(7) (pp. 1433-1434) https://doi.org/10.1373/clinchem.2005.065391
  39. Liandris et al. (2009) Direct detection of unamplified DNA from pathogenic mycobacteria using DNA-derivatized gold nanoparticles 78(3) (pp. 260-264) https://doi.org/10.1016/j.mimet.2009.06.009
  40. Vetrone et al. (2012) Detection of non-PCR amplified S. enteritidis genomic DNA from food matrices using a gold-nanoparticle DNA biosensor: a proof-of-concept study 12(8) (pp. 10487-10499) https://doi.org/10.3390/s120810487
  41. Wu et al. (2012) Aptasensors for rapid detection of Escherichia coli O157:H7 and Salmonella typhimurium 7(1) (pp. 658-664) https://doi.org/10.1186/1556-276X-7-658
  42. Bakthavathsalam et al. (2012) A direct detection of Escherichia coli genomic DNA using gold nanoprobes (pp. 8-17) https://doi.org/10.1186/1477-3155-10-8
  43. Andreadou et al. (2014) A novel non-amplification assay for the detection of Leishmania spp. in clinical samples using gold nanoparticles (pp. 56-61) https://doi.org/10.1016/j.mimet.2013.10.011
  44. Fujita et al. (2012) Structural study on gold nanoparticle functionalized with DNA and its non-cross-linking aggregation 368(1) (pp. 629-635) https://doi.org/10.1016/j.jcis.2011.11.021
  45. Chan et al. (2014) Detection of methicillin-resistant Staphylococcus aureus using a gold nanoparticle-based colourimetric polymerase chain reaction assay (pp. 105-111) https://doi.org/10.1016/j.bios.2013.09.027
  46. Cheung et al. (2013) Structural basis for discriminatory recognition of Plasmodium lactate dehydrogenase by a DNA aptamer 110(40) (pp. 15967-15972) https://doi.org/10.1073/pnas.1309538110
  47. Zagorovsky and Chan (2013) A plasmonic DNAzyme strategy for point-of-care genetic detection of infectious pathogens (pp. 3168-3171) https://doi.org/10.1002/anie.201208715
  48. Huang (2006) Gold nanoparticle-based immunochromatographic test for identification of Staphylococcus aureus from clinical specimens (pp. 139-143) https://doi.org/10.1016/j.cca.2006.05.026
  49. Huang et al. (2009) Single-domain antibody-conjugated nanoaggregate-embedded beads for targeted detection of pathogenic bacteria (pp. 9330-9334) https://doi.org/10.1002/chem.200901397
  50. Varshney and Li (2007) Interdigitated array microelectrode based impedance biosensor coupled with magnetic nanoparticle–antibody conjugates for detection of Escherichia coli O157:H7 in food samples (pp. 2408-2414) https://doi.org/10.1016/j.bios.2006.08.030
  51. Wang et al. (2007) Fluorescent nanoparticles for multiplexed bacteria monitoring 18(2) (pp. 297-301) https://doi.org/10.1021/bc060255n
  52. Wang et al. (2010) Rapid colorimetric identification and targeted photothermal lysis of Salmonella bacteria by using bioconjugated oval-shaped gold nanoparticles (pp. 5600-5606) https://doi.org/10.1002/chem.201000176
  53. Phillips et al. (2008) Rapid and efficient identification of bacteria using gold-nanoparticle–poly(para-phenyleneethynylene) constructs (pp. 2590-2594) https://doi.org/10.1002/anie.200703369
  54. Bennett et al. (1996) The isolation and detection of Escherichia coli O157 by use of immunomagnetic separation and immunoassay procedures 22(3) (pp. 237-243) https://doi.org/10.1111/j.1472-765X.1996.tb01151.x
  55. Chapman et al. (2001) A comparison of immunomagnetic separation and culture, Reveal™ and VIP™ for detection of E. coli O157 in enrichment cultures of naturally contaminated raw beef, lamb and mixed meat products 32(3) (pp. 171-175) https://doi.org/10.1046/j.1472-765x.2001.00883.x